So, I figured I'd chime in with some added info I decided not to include a while back while waiting for the replacement. After initially discussing the other issues my rep assured me the new guitar would be on spec all around when he issued the RMA. So, I emailed the folks at 10 weeks after the RMA was issued and no reply..then two weeks later I sent another email and did get a reply, initial build quote was 4-6 weeks. The fella said "sorry for the wait let me check with the factory" then a couple hours later "send in your guitar and we'll send the replacement." That just seems odd, no contact for 12 weeks then apparently it's just waiting around? Well, the guitar arrived in Fullerton Friday and I'm waiting to see when they ship the new one out. But, just for fun, here were the other issues with the guitar:
I ordered the #2a "vintage v" and thought it was pretty darn fat. The tolerance is .960 +/- .015 so .975 max. Welp, she's over an inch and over the max tolerance by a good bit. I was hoping for a skinnier neck than my boatneck strat more or less to ease my tendonitis issues but no luck here, the stoutness kind of kept me from playing it in general plus doctors orders no playing for one month in August

It'd be cool if G&L had posted the details of the contour too because the "vintage v" was a V from the headstock to the 4th fret then a thick C/D for the rest of the neck. It goes both ways with vintage Leo guitars so it's hard to know without a full description of the contour.
Another thing that came up..the truss nut is so low in the slot (well off center) that the allen wrench makes contact with the cavity when adjusting it. If the neck/nut moved any more I'd have had to chisel out the cavity as it was already difficult to get the wrench in. It's hard to see in the photo but above the nut there was a few millimeters of room while the base of the allen slot was level with the base of the cavity.
Also, posted in another thread, the bevel for the fret ends was shallow..squier affinity shallow and took off a good chunk of playing surface, you can probably see that in the photos from before hand.
[video]http://www.youtube.com/watch?v=8BmEgteWg9Q[/video]
Lastly, buzzing badly on the open B inside (less so on high E) the nut with stock strings/setup. G&L is one thing, but the fellas at MSL with their own "experts" also supposedly do their own setup for better or worse. I guess that slipped by too.
All in all, here it is, a few days near November and still no guitar after initial order late May and RMA in mid July so I'm kind of bitter at this point regardless of the final outcome. It was, once again, a huge purchase for me.